chr6:51774264:G>T Detail (hg19) (PKHD1)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:51,774,264-51,774,264 |
| hg38 | chr6:51,909,466-51,909,466 View the variant detail on this assembly version. |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_170724.2:c.6499C>A | NP_733842.2:p.Gln2167Lys |
| NM_138694.3:c.6499C>A | NP_619639.3:p.Gln2167Lys | |
| Ensemble | ENST00000340994.4:c.6499C>A | ENST00000340994.4:p.Gln2167Lys |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:[No Data.] | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:<0.001 |
Prediction
ClinVar
| Clinical Significance | Conflicting classifications of pathogenicity |
| Review star |  |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
| Clinical significance | Last evaluated | Review status | Condition | Origin | Links |
|---|---|---|---|---|---|
Uncertain significance
|
2016-03-22 | criteria provided, single submitter | not provided |
germline
|
Detail |
Likely benign
|
2023-11-24 | criteria provided, single submitter | autosomal recessive polycystic kidney disease |
germline
|
Detail |
|
Uncertain significance
|
2022-02-08 | criteria provided, single submitter | polycystic kidney disease 4 |
unknown
|
Detail |
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.673 | autosomal recessive polycystic kidney disease | NA | CLINVAR | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NM_138694.4(PKHD1):c.6499C>A (p.Gln2167Lys) AND not provided | ClinVar | Detail |
| NM_138694.4(PKHD1):c.6499C>A (p.Gln2167Lys) AND Autosomal recessive polycystic kidney disease | ClinVar | Detail |
| NM_138694.4(PKHD1):c.6499C>A (p.Gln2167Lys) AND Polycystic kidney disease 4 | ClinVar | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs368263958 dbSNP
- Genome
- hg19
- Position
- chr6:51,774,264-51,774,264
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- T
- East Asian Chromosome Counts (ExAC)
- 8650
- East Asian Allele Counts (ExAC)
- 2
- East Asian Heterozygous Counts (ExAC)
- 2
- East Asian Homozygous Counts (ExAC)
- 0
- East Asian Allele Frequency (ExAC)
- 2.3121387283236994E-4
- Chromosome Counts in All Race (ExAC)
- 121244
- Allele Counts in All Race (ExAC)
- 8
- Heterozygous Counts in All Race (ExAC)
- 6
- Homozygous Counts in All Race (ExAC)
- 1
- Allele Frequency in All Race (ExAC)
- 6.598264656395368E-5
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